#! /bin/bash
#$ -q 1-day
#$ -l h_vmem=10G
#$ -M prodduturi.naresh@mayo.edu
#$ -m a
#$ -V
#$ -cwd
#perl /data4/bsi/bioinf_int/s106381.borawork/naresh_scripts/PAPER/ezimputer/Upgrade_inputmarkers_to_build37_by_DBSNP.pl -DBSNP_DIR /data4/bsi/bioinf_ext2/s109990/m081429_mesa/FINAL_MERGING/DB_DIR -DBSNP_DOWNLOADLINK ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/organism_data/b137_SNPChrPosOnRef.bcp.gz  -INPUT_FILE /data4/bsi/bioinf_ext2/s109990/m081429_mesa/FINAL_MERGING/EXOME/Exome_final.tped -REMAPPED_CURRENT_BUILD /data4/bsi/bioinf_ext2/s109990/m081429_mesa/FINAL_MERGING/EXOME/Exome_final_build37.tped -NOTMAPPED_OLD_BUILD /data4/bsi/bioinf_ext2/s109990/m081429_mesa/FINAL_MERGING/EXOME/Exome_final_build37_old.tped
perl /data4/bsi/bioinf_ext2/s109990/m081429_mesa/FINAL_MERGING/EXOME/perl_update_rsid.pl
